Full text in pdf format

 

Integration of gene maps: mouse chromosome X

 

 

L.H. Wang; A. Collins; S. Lawrence; N.E. Morton

CRC Genetic Epidemiology Research Group, Human Genetics Centre, University of Southampton, Level G, Princess Anne Hospital, Southampton SO9 4HA, UK. Telephone: (0703) 79-6535, Fax: (0703) 79-4346. Send correspondence to N.E.M.

 

 


ABSTRACT

A linkage map was constructed from data in GBASE and integrated with physical and other data. The summary map contains 178 loci in 86 cM (164 Mb). Interference is at the level predicted by Carter and Falconer (J. Genet. 50: 307-323, 1951). Problems encountered in this exercise include data errors and omissions which an integrable location database could correct if it received some of the effort now devoted to subjective maps. The extent to which homologous sequences have been rearranged in mouse and man cannot be determined until steps are taken to make both maps more reliable. There has been remarkably little attention to problems of map integration that are common to all eucaryotes, and the need for a location database is as acute in the mouse as in man.

Keywords: gene maps; mouse; chromosome X.


 

 

REFERENCES

Ashburner, M. (1992). Cytogenetic map. In: The Genome of Drosophila melanogaster. Lindsley DL, Zimm GG. Academic Press, San Diego, pp. 1117-1133.

Barnard, P.J., Deny, J.M.J., Ryder-Cook, A.S. and Barnard, E.A. (1989). Localization of the GABA-A receptor alpha-3 subunit gene on the mouse X chromosome. Cytogenet. Cell Genet. 51: 958 (Abstract).

Borsani, G., Toniorenzi, R., Simmler, M.C., Dandolo, L., Amand, D., Capra, V., Grompe, M., Pizzuti, A., Muzny, D., Lawrence, C., Wilard, H.F., Awner, P. and Ballabio, A. (1991). Characterization of a murine gene expressed from the inactive X chromosome. Nature 351: 325-328.

Boyd, Y., Blair, H., Uwechue, I.C., Read, V., Maslen, G.L. and Laval, S.H. Detailed comparative mapping of the conserved segments which compose Xp11.2 in man and mouse. Abstract, 5th X Chromosome Workshop (in press).

Brown, S.D.M., Avner, P., Boyd, Y., Chapman, V., Rastan, S., Sefton, L., Thomas, J.D. and Herman, G.E. (1993). Mouse X chromosome. Mammalian Genome 4: S269-S281.

Carter, T.C. and Falconer, D.S. (1951). Stocks for detecting linkage in the mouse and the theory of their design. J. Genet. 50: 307-323.

Collins, A., Keats, B.J., Dracopoli, N., Shields, D.C. and Morton, N.E. (1992). Integration of gene maps: chromosome 1. Proc. Natl. Acad. Sci. USA. 89: 4598-4602.

Davisson, M.T. and Roderick, T.H. (1990). Linkage map. In: Genetic Variants and Strains of the Laboratory Mouse (Lyon, M.F. and Searle, A.G., eds.). 2nd edn. Oxford Press, Oxford, pp. 416-427.

Derry, J.M.J. and Barnard, P.J. (1992). Physical linkage of the A-raf-1, properdin, synapsin I, and TIMP genes on the human and mouse X chromosomes. Genomics 12: 632-638.

Dietrich, W.F., Miller, J.C., Steen, R.G., Merchant, M., Damron, D., Nahf, R., Gross, A., Joyce, D.C., Wessel, M., Dridge, R.D., Marquis, A., Stein, L.D., Goodman, N., Page, D.C. and Lander, E.S. (1994). A genetic map of the mouse with 4,006 simple sequence length polymorphisms. Nat. Genet. 7: 220-339.

Evans, E.P. (1989). Standard normal chromosomes. In: Genetic Variants and Strains of the Laboratory Mouse (Lyon, M.F. and Searle, A.G., eds.). 2nd edn. Oxford Press, Oxford, pp. 576-581.

GBASE (1989). The Genetic Database of the Mouse. User Manual, Version 1.1. The Jackson Laboratory, Bar Harbor, Maine.

Haldane, J.B.S. (1919). The combination of linkage values, and the calculation of distances between the loci of linked factors. J. Genet. 8: 299-309.

Haldane, J.B.S. and Waddington, C.H. (1931). Inbreeding and linkage. Genetics 16: 357-374.

Hulten, M. (1974). Chiasma distribution at diakinesis in the normal human male. Hereditas 76: 55-78.

Keats, B.J.B., Sherman, S.L., Morton, N.E., Robson, E.B., Buetow, K.H., Cartwright, P.E., Chakravarti, A., Francke, U., Green, P.P. and Ott, J. (1991). Guidelines for human linkage maps. (ISLM, 1990). Ann. Hum. Genet. 55: 1-6.

Lawrence, S., Collins, A., Keats, B.J., Hulten, M. and Morton, N.E. (1993). Integration of gene maps: chromosome 21. Proc. Natl. Acad. Sci. USA. 90: 7210-7214.

Lindsley, D.L. and Zimm, G.G. (1992). The genome of Drosophila melanogaster. Academic Press, San Diego, pp. 1132.

Lyon, M.F. and Searle, A.G. (1990). Genetic Variants and Strains of the Laboratory Mouse. 2nd edn. Oxford Press, Oxford, pp. 876.

McKusick, V.A. (1992). Mendelian Inheritance in Man. 10th edn. Johns Hopkins University press, Baltimore, pp. 2320.

Morton, N.E. (1991). Gene maps and location databases. Ann. Hum. Genet. 55: 235-241.

Morton, N.E. (1991). Parameters of the human genome. Proc. Natl. Acad. Sci. USA 88: 7474-7476.

Morton, N.E. and Andrews, V. (1989). MAP, an expert system for multiple pairwise linkage analysis. Ann. Hum. Genet. 53: 263-269.

Morton, N.E. and Collins, A. (1990). Standard maps of chromosome 10. Ann. Hum. Genet. 54: 235-251.

Morton, N.E., Collins, A., Lawrence, S. and Shields, D.C. (1992). Algorithms for a location database. Ann. Hum. Genet. 56: 223-232.

NIH/CEPH Collaborative Mapping Group (1992). A comprehensive genetic linkage map of the human genome. Science 258: 67-86.

O'Brien, S.J., Peters, J., Searle, A.G., Womack, J.E., Johnson, P.A. and Graves, J.A.M. (1994). Report of the committee on comparative gene mapping. In: Human Gene Mapping, 1993 (Cuticchia, A.J. and Pearson, P.L., eds.). John Hopkins University Press, Baltimore, pp. 846-892.

Rao, D.C., Morton, N.E., Lindsten, J., Hulten, M. and Yee, S. (1977). A mapping function for man. Hum. Hered. 27: 99-104.

Rao, D.C., Keats, B.J.B., Morton, N.E., Yee, S. and Lew, R. (1978). Variability of human linkage data. Am. J. Hum. Genet. 30: 516-529.

Terwilliger, J. and Ott, J. (1994). Workshop on Statistical Methods in Genetic Mapping. Genomics 22: 496-497.

Wang, L.H., Collins, A., Lawrence, S., Keats, B.J. and Morton, N.E. (1994). Integration of gene maps: chromosome X. Genomics 22: 590-604.