Full text in pdf format

 

A systemic concept of the gene*

 

 

Maria Inês de Moura Campos Pardini; Romeu Cardoso Guimarães

Departamento de Genética, Instituto de Biociências, UNESP, 18618-000 Botucatu, SP, Brasil. Send correspondence to R.C.G.

 

 


ABSTRACT

The univocal correspondence between one gene and one polypeptide has been challenged by many examples of ambiguities. A rapidly expanding list of one-to-many or many-to-one correspondences includes: genomic rearrangements, alternative processing of transcripts, overlapping translation frames, RNA editing, alternative translation modes, and polyprotein cleavage.
The genomic message requires interpretation through decoding by a sophisticated information retrieval system which should also carry some kind of information. The full meaning of the whole cell, as a unit, is emphasized.
The gene is a combination of (one or more) nucleic acid (DNA or RNA) sequences, defined by the system (the whole cell, interacting with the environment, or the environment alone, in subcellular or pre-cellular systems), that gives origin to a product (RNA or polypeptide).

Keywords: Systemic concept; Gene.


 

 

REFERENCES

Atkins, J.F., Elseviers, D. and Gorini, L. (1972). Low activity of beta-galactosidase in frameshifi mutants of Escherichla coll. Proc. Natl. Acad Scl USA 69: 1192-1195.

Atkins, J.F., Gesteland, R.F., Reid, B.R. and Anderson, C.W. (1979). Normal tRNAs promote ribosomal frameshifting. Cell 18: 1119-1131.

Basile, R. and Guimarães, R.C. (1972). Aspectos biológicos e bioquímicas da diferenciação celular. Ciênc. Cult. 24:105-149.

Benyajati, C., Spoerel, N., Haymerle, H. and Ashburner, M. (1983). The messenger for alcohol dehydrogenase in Drosophila melanogaster differs in its 5' end in different developmental stages. Cel1 33: 125-133.

Benzer, S. (1955). Fine structure of a genetic region in bacteriophage. Proc. Nat. Acad Sei. USA 41: 344-354.

Chen, S.H., Habib, G., Yang, C.Y., Gu, Z.W., Lee, B.R., Weng, S.A., Silberman, S.R., Cal, SJ., Deslypere, L., Rosseneu, M., Gotto, A.M. Jr., Li, W.H. and Chan, L. (1987). Apolipoprotein b-48 is the product of a messenger RNA with an organ-specific in-frame stop codon. Science 238: 363-366.

Crabtree, G.R. and Kant, J.A. (1982). Organization of the rat gamma-fibrinogen gene: alternative mRNA splice patterns produce the gamma A and gamma B (gamma') chains of fibrinogen Cell 31: 159-166.

De Lange, T., Kooter, F.M., Michels, RA. and Borst, P. (1983). Telomere conversion in trypanosomes. Nucleic Acids Res. 11: 8149-8165.

Douglass, J., Civelli, O. and Herbert, E. (1984). Polyprotein gene expression: generation of diversity of neuroendocrine peptides. Annu. Rev. Biochem. 53: 665-715.

Early, P., Rogers, J., Davis, M., Calame, K., Bond, M., Wall, R. and Hood, L. (1980). Two mRNAs can be produced from a single immunoglobulin p-gene by alternative RNA processing pathways. Cell 20 313-319.

Falk, R. (1986). What is a gene? Stud Hist. Phil. Scl 17: 133-173.

Fleischaker, G.R. (1990). Origins of life: an operational definition. Orig. Life Evol Biosph. 20 127-137.

Guimarães, R.C. (1986). 0 gene como uma molécula de RNA. Ciênc. Cult. (Suppl.) 38: 939-940.

Hernan, R.C. (1989). Alternatives for the initiation of translation. TIBS 14: 219-222.

Hull, D. (1974). Philosophy of Biologica1 Science. Prentice-Hall, Englewood Cliffs, 189 p.

Jacob, F. and Monod, J. (1961). Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3: 318-356.

Kitcher, P. (1982). Genes. Brit. J. Phil. Scl 33: 337-359.

Leder, P., Honjo, T., Packman, S., Shaw, D., Nau, M. and Norman, B. (1974). The organization and diversity of immunoglobulin genes. Proc. Nat. Acad Scl USA 71: 5109-5115.

Lewin, B. (1990). Genes IV. John Wiley & Sons, New York, p. 109.

Li, N.H. (1983). Evolution of duplicate genes and pseudogenes. In: Nei, M. and Koehn, R.H. Evolution of genes and proteins. Sinauer, Sunderland, 15-33.

Maki, R., Roeder, W., Traunecker, A., Sidman, C., Wabi, M., Raschke, W. and Tonegawa, S. (1984). The role of DNA rearrangement and alternative RNA processing in the expression of immunoglobulin delta genes. Cell 24: 353-365.

Mayr, E. (1982). The Growth of Biological Thought. Diversity, Evolution and Inheritance. Harvard University Press, Cambridge, Mass., p. 736.

Nawa, H., Kotani, H. and Nakanishi, S. (1984). Tissue-specific generation of two preprotachyldnin mRNAs from one gene by alternative RNA splicing. Nature 312: 729-734.

Normark, S., Bergstrom, S., Edlund, T., Grundstrom, T., Jaurin, B., Lindberg, ER and Olsson, O. (1983). Overlapping genes. Annu. Rev. Genet. 17: 499-525.

Nasmyth, K.A., Tatchell, K., Hall, B.D., Astell, C. and Smith, M. (1981). A position effect in the control of transcription of yeast mating-type loci. Nature 289: 244-250.

Powell, L.M., Wallis, S.C., Pease, R.J., Edwards, Y.H., Knott, T.J. and Scott, J. (1987). A novel form of tissue-specific RNA processing produces apoliprotein-B48 in intestine. Cell So: 831-840.

Shaw, D.C., Walker, J.E., Northrop, F.D., Bartell, B.G., Godson, G.N. and Fiddes, J.C. (1978). Gene K, a new overlapping gene in bacteriophage G4. Nature 272: 510.515.

Simpson, L. and Shaw, J. (1989). RNA editing and mitochondrial cryptogenes of kinetoplastid protozoa. Cell 57: 355-366.

Strathem, J.N. and Herskowitz, I. (1979). Asymmetry and directionality in production of new types during clonal growth: the switching pattern of homothallic yeast. Cell 17: 371-381

Thomas, S.M., Lamb, R.A. and Paterson, R.G. (1988). Two mRNAs that differ by two nontemplated nucleotides encode the amino terminal proteins P and V of the Paramyxovirus SV5. Ce1154: 891-902. Yanofsky, C. (1967). Gene structure and protein structure. Sci. Am. 216: 80-94.

Young, R.A., Hagenbuchle, O. and Schibler, U. (1981). A single mouse alpha-amilase gene specificies two different tissue-specific mRNAs. Cell 23: 451-458.

Ziff, E.B. (1980). Transcription and RNA processing by the DNA tumour viruses. Nature 287: 491-499.

 

 

* This article is derived from the Master's Dissertation of the first author, presented to the Instituto de Biociências de Botucatu in 1989.